http://www.sklogwiki.org/SklogWiki/api.php?action=feedcontributions&feedformat=atom&user=109.169.51.127 2026-04-30T19:56:31Z User contributions MediaWiki 1.41.0 http://www.sklogwiki.org/SklogWiki/index.php?title=DynamO&diff=12997 2012-07-31T09:15:13Z

<p>109.169.51.127: Updated the home page link</p> <hr /> <div>'''DYNAMO''' (DYNAMics of discrete Objects) is a general, [[Event-driven molecular dynamics | event driven simulation]] code capable of simulating millions of particles in short times on commodity computers.<br /> ==Features==<br /> Some of the features of DYNAMO are:<br /> <br /> Optimised interactions for:<br /> *[[Hard sphere model | Hard spheres]]<br /> *[[Square well model | Square well]] and [[square shoulder model]]s <br /> *Square bonds<br /> *Soft cores<br /> *[[Parallel hard cubes | Parallel cubes]]<br /> * Rough hard spheres (rotational degrees of freedom).<br /> * Arbitrary stepped isotropic potentials.<br /> <br /> Boundary conditions:<br /> *[[Periodic boundary conditions]]<br /> *[[Lees-Edwards boundary conditions | Lees-Edwards simple shear conditions]]<br /> *Infinite dimensional systems.<br /> *Semi-periodic systems.<br /> *All are generalised for square and rectangular systems.<br /> <br /> Analysis Tools:<br /> *[[Histogram reweighting]] tools.<br /> *[[Replica-exchange molecular dynamics | Replica exchange temperature optimisation]]<br /> *[[Cluster algorithms |Cluster analysis]] of molecular structures to determine the fold-ability of [[polymers |polymer]] sequences and parameters.<br /> <br /> ==References==<br /> &lt;references/&gt;<br /> ==External links==<br /> *[http://dynamomd.org DYNAMO home page]<br /> [[Category: Materials modelling and computer simulation codes]]</div>

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